Table 3 Composition of the C. elegans superimposed network
From: A global analysis of genetic interactions in Caenorhabditis elegans
Network | Links | Nodes | Supported links | Genetically supported links (A) | Genetically supported links (B) | Physically supported links | Coexpression supported links | Co-phenotype supported links |
|---|---|---|---|---|---|---|---|---|
Superimposed network | 75,283 | 7,825 | 929 (7.2) | NA | NA | NA | NA | NA |
SGI | 1,246 | 461 | 63 (2.0) | 43 (1.6) | 53 (1.8) | 9 (5.6) | 2 (9.0) | 4 (5.9)* |
Lehner | 341 | 161 | 25 (5.5) | 13 (10.8) | 23 (7.3) | 3 (22.7) | 1 (17.9) | 1 (30.3) |
Fine genetic interactions | 2,279 | 1,022 | 152 (4.6) | NA | 48 (1.7) | 61 (27.8) | 23 (36.1) | 22 (20.2) |
Transposed SGA | 7,527 | 426 | 66 (2.3) | 5 (4.5) | 5 (3.2)* | 43 (2.2) | 14 (3.0) | 4 (1.3)* |
Interolog | 12,796 | 4,339 | 723 (9.9) | 61 (27.8) | 110 (4.8) | NA | 577 (14.6) | 42 (3.9) |
C. elegans protein interaction | 3,967 | 2,624 | 27 (3.7) | 7 (10.6) | 10 (4.2) | NA | 13 (3.8) | 5 (3.4)* |
Eukaryotic coexpression | 43,363 | 5,232 | 695 (11.8) | 23 (36.1) | 40 (7.2) | 577 (14.6) | NA | 84 (6.1) |
C. elegans co-phenotype | 8,862 | 913 | 153 (5.2) | 22 (20.2) | 30 (6.1) | 42 (3.9) | 84 (6.1) | NA |